miRNA: 3'- -CGGagUACACUGGCC---AGUUG-----AGGCCG- -5'
miRNA: 3'- -CGGagUAca-CUGGCCaGUUGAGGcCG- -5'
miRNA: 3'- -CGGAGU-----ACACUG-----GCCAGU--------------UGaGGCCG- -5'
miRNA: 3'- -CGGAGUACACUGGCCAGUUGAGGCCG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 9539 | 5' | -54.7 | NC_002534.1 | + | 12792 | 0.66 | 0.38359 |
|
Target: 5'- aGCUgaAUGUGACCGGuuuUCAACaacauUUCGGUu -3' miRNA: 3'- -CGGagUACACUGGCC---AGUUG-----AGGCCG- -5' |
|||||||
| 9539 | 5' | -54.7 | NC_002534.1 | + | 1095 | 0.67 | 0.310463 |
|
Target: 5'- aGCCaaAUaggGACCGG-CAACUCCaGCa -3' miRNA: 3'- -CGGagUAca-CUGGCCaGUUGAGGcCG- -5' |
|||||||
| 9539 | 5' | -54.7 | NC_002534.1 | + | 8805 | 0.67 | 0.307938 |
|
Target: 5'- gGCCUCAacuugUGUGACuaucaCGGUCAuggccacccucauuGC-CCGGUu -3' miRNA: 3'- -CGGAGU-----ACACUG-----GCCAGU--------------UGaGGCCG- -5' |
|||||||
| 9539 | 5' | -54.7 | NC_002534.1 | + | 8006 | 1.15 | 6.8e-05 |
|
Target: 5'- cGCCUCAUGUGACCGGUCAACUCCGGCa -3' miRNA: 3'- -CGGAGUACACUGGCCAGUUGAGGCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home