miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9597 3' -54.1 NC_002577.1 + 43286 0.66 0.961638
Target:  5'- ---aAUGUAucGCCCCgGCcGCCCUC-CCu -3'
miRNA:   3'- uauaUACGU--UGGGG-CGcUGGGAGaGG- -5'
9597 3' -54.1 NC_002577.1 + 101402 0.66 0.957999
Target:  5'- gAUAUG-GCAACgCCGUGGCUgucggaUCUCCc -3'
miRNA:   3'- -UAUAUaCGUUGgGGCGCUGGg-----AGAGG- -5'
9597 3' -54.1 NC_002577.1 + 99159 0.66 0.957999
Target:  5'- -----gGCAACUCgGCcaucGACCCUcCUCCc -3'
miRNA:   3'- uauauaCGUUGGGgCG----CUGGGA-GAGG- -5'
9597 3' -54.1 NC_002577.1 + 141363 0.66 0.957999
Target:  5'- -----gGCAGCaCUgGCGAUCCgCUCCu -3'
miRNA:   3'- uauauaCGUUG-GGgCGCUGGGaGAGG- -5'
9597 3' -54.1 NC_002577.1 + 11649 0.66 0.957999
Target:  5'- -----cGCGACCcgaccgcugauCCGCGcGCCC-CUCCg -3'
miRNA:   3'- uauauaCGUUGG-----------GGCGC-UGGGaGAGG- -5'
9597 3' -54.1 NC_002577.1 + 121965 0.66 0.957999
Target:  5'- -----cGCGACCcgaccgcugauCCGCGcGCCC-CUCCg -3'
miRNA:   3'- uauauaCGUUGG-----------GGCGC-UGGGaGAGG- -5'
9597 3' -54.1 NC_002577.1 + 155975 0.66 0.957999
Target:  5'- -----gGCAGCaCUgGCGAUCCgCUCCu -3'
miRNA:   3'- uauauaCGUUG-GGgCGCUGGGaGAGG- -5'
9597 3' -54.1 NC_002577.1 + 153861 0.66 0.95413
Target:  5'- cUGUAUGCGccgACCCaaaGCcGCCUcCUCCu -3'
miRNA:   3'- uAUAUACGU---UGGGg--CGcUGGGaGAGG- -5'
9597 3' -54.1 NC_002577.1 + 128827 0.66 0.950028
Target:  5'- -----aGCGACCaCCGCGugcuACCCUCg-- -3'
miRNA:   3'- uauauaCGUUGG-GGCGC----UGGGAGagg -5'
9597 3' -54.1 NC_002577.1 + 4787 0.66 0.950028
Target:  5'- -----aGCGACCaCCGCGugcuACCCUCg-- -3'
miRNA:   3'- uauauaCGUUGG-GGCGC----UGGGAGagg -5'
9597 3' -54.1 NC_002577.1 + 71847 0.67 0.941108
Target:  5'- uUGUAgaucUGCcauuGCCgCCGCGACCgUCUUg -3'
miRNA:   3'- uAUAU----ACGu---UGG-GGCGCUGGgAGAGg -5'
9597 3' -54.1 NC_002577.1 + 161499 0.67 0.931219
Target:  5'- -----cGCAGCCuCCuCGGCCCUUguggCCg -3'
miRNA:   3'- uauauaCGUUGG-GGcGCUGGGAGa---GG- -5'
9597 3' -54.1 NC_002577.1 + 75211 0.67 0.931219
Target:  5'- ----cUGCAAugUCUCGCacGCCCUCUCCc -3'
miRNA:   3'- uauauACGUU--GGGGCGc-UGGGAGAGG- -5'
9597 3' -54.1 NC_002577.1 + 135839 0.67 0.931219
Target:  5'- -----cGCAGCCuCCuCGGCCCUUguggCCg -3'
miRNA:   3'- uauauaCGUUGG-GGcGCUGGGAGa---GG- -5'
9597 3' -54.1 NC_002577.1 + 134687 0.67 0.920349
Target:  5'- ---gGUGCGGCCCCGUccGACUUUgccgugggaggCUCCa -3'
miRNA:   3'- uauaUACGUUGGGGCG--CUGGGA-----------GAGG- -5'
9597 3' -54.1 NC_002577.1 + 162641 0.67 0.920349
Target:  5'- ---gGUGCGGCCCCGUccGACUUUgccgugggaggCUCCa -3'
miRNA:   3'- uauaUACGUUGGGGCG--CUGGGA-----------GAGG- -5'
9597 3' -54.1 NC_002577.1 + 157650 0.68 0.914546
Target:  5'- -----cGCAACCCUGCGAUUCUaagacgcuUUCCc -3'
miRNA:   3'- uauauaCGUUGGGGCGCUGGGA--------GAGG- -5'
9597 3' -54.1 NC_002577.1 + 71470 0.68 0.908499
Target:  5'- gAUGUAUGUcguguCCCCGgGAaagCUCUCCa -3'
miRNA:   3'- -UAUAUACGuu---GGGGCgCUgg-GAGAGG- -5'
9597 3' -54.1 NC_002577.1 + 1765 0.68 0.899629
Target:  5'- -gGUAgGCGcgaagguuggGCCCguuagggcuaggaGCGACCCUCUCCc -3'
miRNA:   3'- uaUAUaCGU----------UGGGg------------CGCUGGGAGAGG- -5'
9597 3' -54.1 NC_002577.1 + 131848 0.68 0.899629
Target:  5'- -gGUAgGCGcgaagguuggGCCCguuagggcuaggaGCGACCCUCUCCc -3'
miRNA:   3'- uaUAUaCGU----------UGGGg------------CGCUGGGAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.