Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9604 | 5' | -57.7 | NC_002577.1 | + | 81152 | 0.66 | 0.843006 |
Target: 5'- cCUgCGGGUAGAuCGGccauuauucccGUAGAGGGAGu -3' miRNA: 3'- -GAgGCCUAUCUcGCCu----------CGUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 123368 | 0.67 | 0.826717 |
Target: 5'- -gCUGGGcaacgAGAuaGGAGUAGAGGGAu -3' miRNA: 3'- gaGGCCUa----UCUcgCCUCGUCUCCCUc -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 124437 | 0.66 | 0.873305 |
Target: 5'- gUCUGGcgAuGGCGcGGGCGG-GGGAGu -3' miRNA: 3'- gAGGCCuaUcUCGC-CUCGUCuCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 162755 | 0.67 | 0.801016 |
Target: 5'- --aCGGAUAGAaccgcucaaucGgGGGGgGGGGGGGGg -3' miRNA: 3'- gagGCCUAUCU-----------CgCCUCgUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 134572 | 0.67 | 0.801016 |
Target: 5'- --aCGGAUAGAaccgcucaaucGgGGGGgGGGGGGGGg -3' miRNA: 3'- gagGCCUAUCU-----------CgCCUCgUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 72070 | 0.67 | 0.792142 |
Target: 5'- aUCU--GUAGGGCGuAGCGGAGGGAu -3' miRNA: 3'- gAGGccUAUCUCGCcUCGUCUCCCUc -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 10246 | 0.67 | 0.826717 |
Target: 5'- -gCUGGGcaacgAGAuaGGAGUAGAGGGAu -3' miRNA: 3'- gaGGCCUa----UCUcgCCUCGUCUCCCUc -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 1161 | 0.67 | 0.783128 |
Target: 5'- -aCgGGggGGGGgGGGGUuGAGGGGGg -3' miRNA: 3'- gaGgCCuaUCUCgCCUCGuCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 7331 | 0.68 | 0.773983 |
Target: 5'- ---gGGggGGAGgGGGGgGGGGGGGGg -3' miRNA: 3'- gaggCCuaUCUCgCCUCgUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 156610 | 0.68 | 0.764715 |
Target: 5'- ---gGGGUGGGG-GGGGCAcgcccGAGGGAGg -3' miRNA: 3'- gaggCCUAUCUCgCCUCGU-----CUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 156833 | 0.68 | 0.755332 |
Target: 5'- --gUGGggGGAGgGGAaccguGCGGAGGGGGg -3' miRNA: 3'- gagGCCuaUCUCgCCU-----CGUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 135370 | 0.73 | 0.479917 |
Target: 5'- -gUCGG--GGGGgGGGGCGGGGGGAGu -3' miRNA: 3'- gaGGCCuaUCUCgCCUCGUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 121919 | 0.76 | 0.335842 |
Target: 5'- aUgCGGAgcgcgAGAGCGGAGCcggggacGGAGGGGGc -3' miRNA: 3'- gAgGCCUa----UCUCGCCUCG-------UCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 157050 | 0.78 | 0.255756 |
Target: 5'- gCUCCGGAggGGAGCGGgugcgaGGCGGGGGGc- -3' miRNA: 3'- -GAGGCCUa-UCUCGCC------UCGUCUCCCuc -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 21180 | 1.08 | 0.00251 |
Target: 5'- cCUCCGGAUAGAGCGGAGCAGAGGGAGu -3' miRNA: 3'- -GAGGCCUAUCUCGCCUCGUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 134689 | 0.7 | 0.657158 |
Target: 5'- uUUCGGAgaaggUAGGGCGGAGUucugaggcuuGAGGGAc -3' miRNA: 3'- gAGGCCU-----AUCUCGCCUCGu---------CUCCCUc -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 131987 | 0.76 | 0.314756 |
Target: 5'- aCUCgGGggGGGGgGGGGgGGAGGGGGg -3' miRNA: 3'- -GAGgCCuaUCUCgCCUCgUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 134366 | 0.69 | 0.716837 |
Target: 5'- -cCUGGGUcucGGGGgGGGGgGGGGGGGGc -3' miRNA: 3'- gaGGCCUA---UCUCgCCUCgUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 164246 | 0.68 | 0.745845 |
Target: 5'- uUuuGGggGGGGgGGugaaauGCAGGGGGGGa -3' miRNA: 3'- gAggCCuaUCUCgCCu-----CGUCUCCCUC- -5' |
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9604 | 5' | -57.7 | NC_002577.1 | + | 158319 | 0.68 | 0.754388 |
Target: 5'- -gCgGGAgGGAGCGcgguggcGGGCGGGGGGGGc -3' miRNA: 3'- gaGgCCUaUCUCGC-------CUCGUCUCCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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