miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9795 5' -53.5 NC_002593.1 + 30293 0.66 0.930392
Target:  5'- --cAUGGUGCUGCGuCCCGaCUcuaGACu -3'
miRNA:   3'- guuUACCAUGACGU-GGGC-GGug-CUGc -5'
9795 5' -53.5 NC_002593.1 + 33533 0.67 0.879032
Target:  5'- -uGGUGGUaguGCUGCAgcaUCGCCuuggGCGACGa -3'
miRNA:   3'- guUUACCA---UGACGUg--GGCGG----UGCUGC- -5'
9795 5' -53.5 NC_002593.1 + 70024 0.67 0.893391
Target:  5'- uGAGUGGUA-UGgGCCUGaCCGCGuCGg -3'
miRNA:   3'- gUUUACCAUgACgUGGGC-GGUGCuGC- -5'
9795 5' -53.5 NC_002593.1 + 37901 1.08 0.003855
Target:  5'- uCAAAUGGUACUGCACCCGCCACGACGc -3'
miRNA:   3'- -GUUUACCAUGACGUGGGCGGUGCUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.