miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9824 3' -50.4 NC_002615.1 + 5366 0.67 0.296566
Target:  5'- uGGUGGcCAGCAcugacguuguGAcgGCUGaCAACGUUGc -3'
miRNA:   3'- gUCACC-GUUGU----------CUa-CGAC-GUUGCAAC- -5'
9824 3' -50.4 NC_002615.1 + 2927 0.67 0.305743
Target:  5'- uGGcGGCGAUAGGUGCaguUGCAACu--- -3'
miRNA:   3'- gUCaCCGUUGUCUACG---ACGUUGcaac -5'
9824 3' -50.4 NC_002615.1 + 3030 0.67 0.315136
Target:  5'- gAGUGGCAGCAaAUGC-GCcGCGa-- -3'
miRNA:   3'- gUCACCGUUGUcUACGaCGuUGCaac -5'
9824 3' -50.4 NC_002615.1 + 5430 1.08 0.000172
Target:  5'- gCAGUGGCAACAGAUGCUGCAACGUUGu -3'
miRNA:   3'- -GUCACCGUUGUCUACGACGUUGCAAC- -5'
9824 3' -50.4 NC_002615.1 + 5352 0.71 0.150358
Target:  5'- gUAGUGGUcccaggAACAGAUGCUGUgguAGCGg-- -3'
miRNA:   3'- -GUCACCG------UUGUCUACGACG---UUGCaac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.