miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9868 3' -51.8 NC_002641.1 + 135398 0.66 0.98846
Target:  5'- uACGCCCACAugugACAUggaugUCCGGuguuuuggaccGAUGcGCg -3'
miRNA:   3'- -UGCGGGUGU----UGUGa----AGGCC-----------CUAUaUG- -5'
9868 3' -51.8 NC_002641.1 + 147074 0.66 0.98846
Target:  5'- uACGCCCACAugugACAUggaugUCCGGuguuuuggaccGAUGcGCg -3'
miRNA:   3'- -UGCGGGUGU----UGUGa----AGGCC-----------CUAUaUG- -5'
9868 3' -51.8 NC_002641.1 + 8669 0.66 0.98846
Target:  5'- cACGCUCAUGACAUUUCau-GAUGUAUg -3'
miRNA:   3'- -UGCGGGUGUUGUGAAGgccCUAUAUG- -5'
9868 3' -51.8 NC_002641.1 + 145724 0.66 0.988311
Target:  5'- gGCGCguaccgacggcugCCGCGugGacgUCCGcGGGUGUACa -3'
miRNA:   3'- -UGCG-------------GGUGUugUga-AGGC-CCUAUAUG- -5'
9868 3' -51.8 NC_002641.1 + 136748 0.66 0.988311
Target:  5'- gGCGCguaccgacggcugCCGCGugGacgUCCGcGGGUGUACa -3'
miRNA:   3'- -UGCG-------------GGUGUugUga-AGGC-CCUAUAUG- -5'
9868 3' -51.8 NC_002641.1 + 21626 0.66 0.981283
Target:  5'- uUGUCCugGACGaa--CGGGAUGUAUa -3'
miRNA:   3'- uGCGGGugUUGUgaagGCCCUAUAUG- -5'
9868 3' -51.8 NC_002641.1 + 155069 0.67 0.979055
Target:  5'- cGCGCCCGCAgggggggccGCAgUuuauaUCCGaGGcUGUACg -3'
miRNA:   3'- -UGCGGGUGU---------UGUgA-----AGGC-CCuAUAUG- -5'
9868 3' -51.8 NC_002641.1 + 103151 0.67 0.979055
Target:  5'- cACGCCCA-AGCGCUcagaagaCgCGGGAUAUGa -3'
miRNA:   3'- -UGCGGGUgUUGUGAa------G-GCCCUAUAUg -5'
9868 3' -51.8 NC_002641.1 + 127403 0.67 0.979055
Target:  5'- cGCGCCCGCAgggggggccGCAgUuuauaUCCGaGGcUGUACg -3'
miRNA:   3'- -UGCGGGUGU---------UGUgA-----AGGC-CCuAUAUG- -5'
9868 3' -51.8 NC_002641.1 + 118233 0.67 0.976636
Target:  5'- gUGCCCuaucuGCAACGCUucucugcugUCCGGGu--UACu -3'
miRNA:   3'- uGCGGG-----UGUUGUGA---------AGGCCCuauAUG- -5'
9868 3' -51.8 NC_002641.1 + 5489 0.67 0.974017
Target:  5'- gUGCCCuaucuGCAACGCUuccugcugUCCGGGu--UACu -3'
miRNA:   3'- uGCGGG-----UGUUGUGA--------AGGCCCuauAUG- -5'
9868 3' -51.8 NC_002641.1 + 69505 0.67 0.971193
Target:  5'- gGCGUgauggugaCUGCGACAUUUCUGGGAUGc-- -3'
miRNA:   3'- -UGCG--------GGUGUUGUGAAGGCCCUAUaug -5'
9868 3' -51.8 NC_002641.1 + 32310 0.67 0.968154
Target:  5'- uCGCUguCAACACaaacccUCCGGGGaAUACg -3'
miRNA:   3'- uGCGGguGUUGUGa-----AGGCCCUaUAUG- -5'
9868 3' -51.8 NC_002641.1 + 82175 0.69 0.93893
Target:  5'- uGCGCCaACAuugcCGCUUCCGGacuuuucguucguuGAUAUACu -3'
miRNA:   3'- -UGCGGgUGUu---GUGAAGGCC--------------CUAUAUG- -5'
9868 3' -51.8 NC_002641.1 + 129040 0.69 0.93544
Target:  5'- cCGCCgGCAGcCGC-UCCGGGGccUACg -3'
miRNA:   3'- uGCGGgUGUU-GUGaAGGCCCUauAUG- -5'
9868 3' -51.8 NC_002641.1 + 153432 0.69 0.93544
Target:  5'- cCGCCgGCAGcCGC-UCCGGGGccUACg -3'
miRNA:   3'- uGCGGgUGUU-GUGaAGGCCCUauAUG- -5'
9868 3' -51.8 NC_002641.1 + 86656 0.7 0.919077
Target:  5'- gGCGCUUaaGCGACGCUgcucauuaUCGGGAUAUAUc -3'
miRNA:   3'- -UGCGGG--UGUUGUGAa-------GGCCCUAUAUG- -5'
9868 3' -51.8 NC_002641.1 + 107544 0.71 0.882487
Target:  5'- uAUGCCCauauugcgguacucgACAGCACaUUCGGGcAUGUGCu -3'
miRNA:   3'- -UGCGGG---------------UGUUGUGaAGGCCC-UAUAUG- -5'
9868 3' -51.8 NC_002641.1 + 119491 0.75 0.696627
Target:  5'- gAUGUaCCGCcGCACUUCCGGGAUugACu -3'
miRNA:   3'- -UGCG-GGUGuUGUGAAGGCCCUAuaUG- -5'
9868 3' -51.8 NC_002641.1 + 4231 0.75 0.696627
Target:  5'- gAUGUaCCGCcGCACUUCCGGGAUugACu -3'
miRNA:   3'- -UGCG-GGUGuUGUGAAGGCCCUAuaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.