Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9936 | 3' | -61.3 | NC_002641.1 | + | 5654 | 0.72 | 0.358228 |
Target: 5'- aUCaGCGCGCGGCG--GGCCGACcgGCuCGa -3' miRNA: 3'- -AGaCGCGCGCCGUagUCGGCUG--CG-GC- -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 47803 | 0.7 | 0.431235 |
Target: 5'- aUCUGCGCGUcgauGGCAUU-GCCGAgaagacCGCCc -3' miRNA: 3'- -AGACGCGCG----CCGUAGuCGGCU------GCGGc -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 49161 | 0.66 | 0.667654 |
Target: 5'- aUCUGC-CGCaGCGUCcgcaaguucggcGGCCGAUGCa- -3' miRNA: 3'- -AGACGcGCGcCGUAG------------UCGGCUGCGgc -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 56044 | 1.08 | 0.001264 |
Target: 5'- gUCUGCGCGCGGCAUCAGCCGACGCCGc -3' miRNA: 3'- -AGACGCGCGCCGUAGUCGGCUGCGGC- -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 56236 | 0.93 | 0.013235 |
Target: 5'- -gUGCGCGCGGCGUCGGCUGAUGCCGc -3' miRNA: 3'- agACGCGCGCCGUAGUCGGCUGCGGC- -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 118068 | 0.72 | 0.358228 |
Target: 5'- aUCaGCGCGCGGCG--GGCCGACcgGCuCGa -3' miRNA: 3'- -AGaCGCGCGCCGUagUCGGCUG--CG-GC- -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 125073 | 0.66 | 0.677436 |
Target: 5'- --cGUGCGCGGCGcuggUAGCCcuGGcCGCCa -3' miRNA: 3'- agaCGCGCGCCGUa---GUCGG--CU-GCGGc -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 125389 | 0.66 | 0.713266 |
Target: 5'- cCUGCGCgccguuagcgagcgGCGGCAcgcaggCAGCguuguCGGCGCUGc -3' miRNA: 3'- aGACGCG--------------CGCCGUa-----GUCG-----GCUGCGGC- -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 125442 | 0.67 | 0.608665 |
Target: 5'- gCUGCG-GCGaGCggCGGCCGA-GCUGg -3' miRNA: 3'- aGACGCgCGC-CGuaGUCGGCUgCGGC- -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 125488 | 0.69 | 0.531117 |
Target: 5'- aCUGC-UGCGGCAaggaagGGCCGcCGCCGa -3' miRNA: 3'- aGACGcGCGCCGUag----UCGGCuGCGGC- -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 136556 | 0.66 | 0.696887 |
Target: 5'- --cGCGgacguccaCGCGGCAgccgUCGguacgcGCCGACGCCa -3' miRNA: 3'- agaCGC--------GCGCCGU----AGU------CGGCUGCGGc -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 145917 | 0.66 | 0.696887 |
Target: 5'- --cGCGgacguccaCGCGGCAgccgUCGguacgcGCCGACGCCa -3' miRNA: 3'- agaCGC--------GCGCCGU----AGU------CGGCUGCGGc -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 156984 | 0.69 | 0.531117 |
Target: 5'- aCUGC-UGCGGCAaggaagGGCCGcCGCCGa -3' miRNA: 3'- aGACGcGCGCCGUag----UCGGCuGCGGC- -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 157030 | 0.67 | 0.608665 |
Target: 5'- gCUGCG-GCGaGCggCGGCCGA-GCUGg -3' miRNA: 3'- aGACGCgCGC-CGuaGUCGGCUgCGGC- -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 157083 | 0.66 | 0.713266 |
Target: 5'- cCUGCGCgccguuagcgagcgGCGGCAcgcaggCAGCguuguCGGCGCUGc -3' miRNA: 3'- aGACGCG--------------CGCCGUa-----GUCG-----GCUGCGGC- -5' |
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9936 | 3' | -61.3 | NC_002641.1 | + | 157400 | 0.66 | 0.677436 |
Target: 5'- --cGUGCGCGGCGcuggUAGCCcuGGcCGCCa -3' miRNA: 3'- agaCGCGCGCCGUa---GUCGG--CU-GCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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