miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9938 5' -54.5 NC_002641.1 + 6158 0.66 0.947489
Target:  5'- ----cGCgcgCCGGGCGcgguucgaaaaugcuUUCCGCCucgcucagugucaacGCCa -3'
miRNA:   3'- uuuuaCGaa-GGCCCGU---------------AAGGCGG---------------CGG- -5'
9938 5' -54.5 NC_002641.1 + 116909 0.66 0.947489
Target:  5'- ----cGCgcgCCGGGCGcgguucgaaaaugcuUUCCGCCucgcucagugucaacGCCa -3'
miRNA:   3'- uuuuaCGaa-GGCCCGU---------------AAGGCGG---------------CGG- -5'
9938 5' -54.5 NC_002641.1 + 39109 0.66 0.943905
Target:  5'- -uAAUGCgccacgUCCGGGCGUUgaGaUCGCUu -3'
miRNA:   3'- uuUUACGa-----AGGCCCGUAAggC-GGCGG- -5'
9938 5' -54.5 NC_002641.1 + 118322 0.66 0.934259
Target:  5'- cAAAUGCgccCCGGGCccgaGUaCgCGCCGCa -3'
miRNA:   3'- uUUUACGaa-GGCCCG----UAaG-GCGGCGg -5'
9938 5' -54.5 NC_002641.1 + 5401 0.66 0.934259
Target:  5'- cAAAUGCgccCCGGGCccgaGUaCgCGCCGCa -3'
miRNA:   3'- uUUUACGaa-GGCCCG----UAaG-GCGGCGg -5'
9938 5' -54.5 NC_002641.1 + 151485 0.66 0.934259
Target:  5'- gGAAggGCUuagucauggcUCCGGGaCAUUUCcuucCCGCCg -3'
miRNA:   3'- -UUUuaCGA----------AGGCCC-GUAAGGc---GGCGG- -5'
9938 5' -54.5 NC_002641.1 + 130988 0.66 0.934259
Target:  5'- gGAAggGCUuagucauggcUCCGGGaCAUUUCcuucCCGCCg -3'
miRNA:   3'- -UUUuaCGA----------AGGCCC-GUAAGGc---GGCGG- -5'
9938 5' -54.5 NC_002641.1 + 78917 0.67 0.917937
Target:  5'- -cGAUGac-CCGGGacuuaAUUCCGCUGCa -3'
miRNA:   3'- uuUUACgaaGGCCCg----UAAGGCGGCGg -5'
9938 5' -54.5 NC_002641.1 + 118809 0.67 0.912002
Target:  5'- ----aGCUUUuCGGcGCGguuggCUGCCGCCg -3'
miRNA:   3'- uuuuaCGAAG-GCC-CGUaa---GGCGGCGG- -5'
9938 5' -54.5 NC_002641.1 + 4913 0.67 0.912002
Target:  5'- ----aGCUUUuCGGcGCGguuggCUGCCGCCg -3'
miRNA:   3'- uuuuaCGAAG-GCC-CGUaa---GGCGGCGG- -5'
9938 5' -54.5 NC_002641.1 + 136473 0.68 0.885831
Target:  5'- ---cUGCcgacacgCCGGGCAacUUCacgGCCGCCc -3'
miRNA:   3'- uuuuACGaa-----GGCCCGU--AAGg--CGGCGG- -5'
9938 5' -54.5 NC_002641.1 + 145999 0.68 0.885831
Target:  5'- ---cUGCcgacacgCCGGGCAacUUCacgGCCGCCc -3'
miRNA:   3'- uuuuACGaa-----GGCCCGU--AAGg--CGGCGG- -5'
9938 5' -54.5 NC_002641.1 + 86893 0.68 0.885831
Target:  5'- --cAUGCUgCCGGGaa-UCCGCCGa- -3'
miRNA:   3'- uuuUACGAaGGCCCguaAGGCGGCgg -5'
9938 5' -54.5 NC_002641.1 + 118594 0.69 0.822724
Target:  5'- uGAAUGCcuaUgCGGGCGguggcacCCGCCGUCg -3'
miRNA:   3'- uUUUACGa--AgGCCCGUaa-----GGCGGCGG- -5'
9938 5' -54.5 NC_002641.1 + 5129 0.69 0.822724
Target:  5'- uGAAUGCcuaUgCGGGCGguggcacCCGCCGUCg -3'
miRNA:   3'- uUUUACGa--AgGCCCGUaa-----GGCGGCGG- -5'
9938 5' -54.5 NC_002641.1 + 85173 0.7 0.777221
Target:  5'- ----aGCUUCUGuGGCAgcggCUGCgGCCa -3'
miRNA:   3'- uuuuaCGAAGGC-CCGUaa--GGCGgCGG- -5'
9938 5' -54.5 NC_002641.1 + 151228 0.72 0.6566
Target:  5'- ---cUGCUUCCcGGCAUgcgcUCCcCCGCCu -3'
miRNA:   3'- uuuuACGAAGGcCCGUA----AGGcGGCGG- -5'
9938 5' -54.5 NC_002641.1 + 131244 0.72 0.6566
Target:  5'- ---cUGCUUCCcGGCAUgcgcUCCcCCGCCu -3'
miRNA:   3'- uuuuACGAAGGcCCGUA----AGGcGGCGG- -5'
9938 5' -54.5 NC_002641.1 + 72028 1.11 0.002865
Target:  5'- gAAAAUGCUUCCGGGCAUUCCGCCGCCa -3'
miRNA:   3'- -UUUUACGAAGGCCCGUAAGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.