miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9960 5' -55.4 NC_002641.1 + 80296 0.66 0.930481
Target:  5'- -cGUGCCG-UUUCGUGCAaagcaugccCGGAGGCa -3'
miRNA:   3'- gcUACGGCuAGAGCGUGU---------GUCUCCGa -5'
9960 5' -55.4 NC_002641.1 + 117764 0.66 0.930481
Target:  5'- gGGUGgCGcgg-CGCAUACGGGGGCc -3'
miRNA:   3'- gCUACgGCuagaGCGUGUGUCUCCGa -5'
9960 5' -55.4 NC_002641.1 + 45649 0.68 0.866892
Target:  5'- aGAUGCUGAUaCUgGCA-GCAGAGGa- -3'
miRNA:   3'- gCUACGGCUA-GAgCGUgUGUCUCCga -5'
9960 5' -55.4 NC_002641.1 + 140823 0.68 0.866141
Target:  5'- uGAcUGCCGGUCUCGUACuacuuucGCAcAGGUg -3'
miRNA:   3'- gCU-ACGGCUAGAGCGUG-------UGUcUCCGa -5'
9960 5' -55.4 NC_002641.1 + 139173 0.68 0.859291
Target:  5'- ---aGCaGAUCUCGCAaccucCAgGGAGGCUa -3'
miRNA:   3'- gcuaCGgCUAGAGCGU-----GUgUCUCCGA- -5'
9960 5' -55.4 NC_002641.1 + 5662 0.72 0.664127
Target:  5'- aGcgGCCGAUCa-GCGCGCGGcGGGCc -3'
miRNA:   3'- gCuaCGGCUAGagCGUGUGUC-UCCGa -5'
9960 5' -55.4 NC_002641.1 + 118060 0.72 0.664127
Target:  5'- aGcgGCCGAUCa-GCGCGCGGcGGGCc -3'
miRNA:   3'- gCuaCGGCUAGagCGUGUGUC-UCCGa -5'
9960 5' -55.4 NC_002641.1 + 118846 0.81 0.214586
Target:  5'- aGAUGCCGAuuUCUCGCACACcuGGAccGGCUc -3'
miRNA:   3'- gCUACGGCU--AGAGCGUGUG--UCU--CCGA- -5'
9960 5' -55.4 NC_002641.1 + 4877 0.81 0.214586
Target:  5'- aGAUGCCGAuuUCUCGCACACcuGGAccGGCUc -3'
miRNA:   3'- gCUACGGCU--AGAGCGUGUG--UCU--CCGA- -5'
9960 5' -55.4 NC_002641.1 + 134344 1.09 0.003557
Target:  5'- cCGAUGCCGAUCUCGCACACAGAGGCUg -3'
miRNA:   3'- -GCUACGGCUAGAGCGUGUGUCUCCGA- -5'
9960 5' -55.4 NC_002641.1 + 148129 1.09 0.003557
Target:  5'- cCGAUGCCGAUCUCGCACACAGAGGCUg -3'
miRNA:   3'- -GCUACGGCUAGAGCGUGUGUCUCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.