miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41057066 NC_005336.1 Orf virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
25201 + 91147 88 19 -25.1 NP_957863 5' arm      3' arm
25205 + 92371 87 19 -23.7 5' arm      3' arm
25037 + 8042 86 19 -29.3 NP_957786 5' arm      3' arm
25040 + 9222 89 19 -29.9 NP_957787 5' arm      3' arm
25141 + 63106 86 19 -25.5 NP_957838 5' arm      3' arm
25052 + 17046 87 19 -21.8 NP_957795 5' arm      3' arm
25206 + 93017 80 19 -20.86 NP_957864 5' arm      3' arm
25171 + 80220 90 19 -20 NP_957853 5' arm      3' arm
25202 + 91391 89 19 -22.9 NP_957863 5' arm      3' arm
25272 - 1901 90 19 -20.5 5' arm      3' arm
25071 + 22832 90 19 -21.2 5' arm      3' arm
25058 + 19070 88 19 -27.7 NP_957796 5' arm      3' arm
25150 + 70916 90 19 -25.4 NP_957845 5' arm      3' arm
25133 + 58876 89 19 -25.5 NP_957835 5' arm      3' arm
25074 + 25108 89 19 -29.8 NP_957802 5' arm      3' arm
25063 + 20552 90 19 -21.1 NP_957798 5' arm      3' arm
25072 + 23461 78 19 -23.6 NP_957800 5' arm      3' arm
25131 + 57740 90 19 -22.7 NP_957833 5' arm      3' arm
25088 + 31166 89 19 -26.3 NP_957806 5' arm      3' arm
25054 + 17568 89 19 -26 NP_957795 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.