miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29520	+	143352	87	19	-36.6			5' arm      3' arm
29635	-	120252	88	23	-36	YP_068386		5' arm      3' arm
29378	+	6936	87	19.5	-34.5	YP_068322		5' arm      3' arm
29400	+	25051	89	20	-34.2	YP_068332		5' arm      3' arm
29523	-	1705	90	24	-34.1	YP_068318		5' arm      3' arm
29553	-	45605	90	24.5	-33.9	YP_068341		5' arm      3' arm
29557	-	49338	86	21	-33.8	YP_068343		5' arm      3' arm
29600	-	82609	80	21	-32.8	YP_068366		5' arm      3' arm
29581	-	67183	89	21.5	-32.5	YP_068356		5' arm      3' arm
29546	-	30420	88	25	-32.5	YP_068335		5' arm      3' arm
29636	-	120408	90	20	-32.2	YP_068386		5' arm      3' arm
29482	+	95959	87	20.5	-31.9			5' arm      3' arm
29602	-	85063	89	21	-31.9	YP_068368		5' arm      3' arm
29521	-	183	89	24.5	-31.8			5' arm      3' arm
29474	+	91546	88	21.5	-31.8	YP_068371		5' arm      3' arm
29405	+	27813	87	22	-31.6	YP_068333		5' arm      3' arm
29605	-	90651	86	24	-31.4	YP_068371		5' arm      3' arm
29470	+	87816	90	21	-31.4	YP_068370		5' arm      3' arm
29479	+	95131	86	22	-31.3	YP_068376		5' arm      3' arm
29515	+	136127	86	19	-31			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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