miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
82503188 NC_007605.1 Human herpesvirus 4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
33376 + 140017 90 25 -27.6 ebv-mir-BART6 5' arm      3' arm
33370 + 139214 87 27 -26.1 ebv-mir-BART4 5' arm      
33277 + 40749 90 21 -24.5 5' arm      3' arm
33281 + 42840 81 25 -22.7 ebv-mir-BHRF1-2 5' arm      3' arm
33278 + 41464 81 23.5 -24.7 ebv-mir-BHRF1-1 5' arm      
33279 + 41673 88 21.5 -22.5 5' arm      3' arm
33369 + 139071 89 29 -25.1 ebv-mir-BART3 5' arm      3' arm
33349 + 105116 89 19.5 -23.9 5' arm      3' arm
33280 + 41814 87 21 -20.7 5' arm      3' arm
33275 + 35971 89 20.5 -20.89 5' arm      3' arm
33374 + 139780 90 19 -22.5 ebv-mir-BART16 5' arm      
33274 + 9112 89 20.5 -20.4 5' arm      3' arm
33375 + 139901 88 26.5 -32.4 ebv-mir-BART17 5' arm      3' arm
33371 + 139335 89 23 -23.6 ebv-mir-BART1 5' arm      3' arm
33372 + 139502 90 21 -24.6 ebv-mir-BART15       3' arm
33273 + 9009 86 28 -35 5' arm      3' arm
33272 + 7934 90 26 -24.2 5' arm      3' arm
33271 + 6653 90 22 -25.2 5' arm      3' arm
33373 + 139661 89 24 -29.8 ebv-mir-BART5 5' arm      
33282 + 42955 87 20.5 -21.7 ebv-mir-BHRF1-3 5' arm      
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.