miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
178	+	25895	90	22	-37.3	AP_000178		5' arm      3' arm
168	+	10629	89	20.5	-36.3			5' arm      3' arm
183	-	10718	87	23	-36.3			5' arm      3' arm
204	-	24722	90	20	-32.7	AP_000178		5' arm      3' arm
195	-	18400	90	19	-32.4	AP_000174		5' arm      3' arm
179	-	2179	87	21	-30.6	AP_000162		5' arm      3' arm
186	-	12655	86	22.5	-29.7	AP_000169		5' arm      3' arm
155	+	4516	90	25	-29.6	AP_000165		5' arm      3' arm
184	-	11153	90	23	-29.2	AP_000168		5' arm      3' arm
213	-	34565	89	19.5	-28.5	AP_000194		5' arm      3' arm
162	+	6597	86	22.5	-28.2	AP_000166		5' arm      3' arm
164	+	8334	90	20	-28.2	AP_000166		5' arm      3' arm
197	-	18966	89	20	-27.7	AP_000175		5' arm      3' arm
166	+	10069	75	21	-27.3	AP_000167		5' arm      3' arm
187	-	13108	90	20.5	-27.2	AP_000169		5' arm      3' arm
190	-	13940	90	20	-26.7	AP_000169		5' arm      3' arm
207	-	26441	89	20.5	-26.6	AP_000179		5' arm      3' arm
206	-	26284	89	22.5	-26.2	AP_000179		5' arm      3' arm
175	+	23279	79	19	-26	AP_000177		5' arm      3' arm
158	+	5292	88	25.5	-25.9	AP_000166		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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