miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9627363 NC_001591.1 Human papillomavirus type 49

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3417 + 768 90 22 -24.7 NP_041833 5' arm      3' arm
3418 + 3850 90 19.5 -23.1 NP_041835 5' arm      3' arm
3420 - 4635 83 21.5 -19.8 NP_041836 5' arm      3' arm
3419 - 3791 78 19.5 -27.3 NP_041835 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.