miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9790308 NC_001545.1 Rubella virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3294 + 830 87 20 -25.9 NP_062883 5' arm      3' arm
3295 + 1851 89 21.5 -20.5 NP_062883 5' arm      3' arm
3296 + 3731 90 21.5 -25.24 NP_062883 5' arm      3' arm
3297 + 3955 90 20 -26.1 NP_062883 5' arm      3' arm
3298 + 4784 87 19 -24.4 NP_062883 5' arm      3' arm
3299 + 5856 87 19 -24.3 NP_062883 5' arm      3' arm
3300 + 7797 81 20 -31.5 NP_062884 5' arm      3' arm
3301 + 8206 85 19 -24.22 NP_062884 5' arm      3' arm
3302 + 8886 90 19.5 -27 NP_062884 5' arm      3' arm
3303 + 9453 89 20.5 -26.1 NP_062884 5' arm      3' arm
3304 + 9543 89 22.5 -33.6 NP_062884 5' arm      3' arm
3305 - 459 89 20 -25.9 NP_062883 5' arm      3' arm
3306 - 2086 87 20.5 -19.9 NP_062883 5' arm      3' arm
3307 - 3244 88 21.5 -19.4 NP_062883 5' arm      3' arm
3308 - 3334 89 21 -22.8 NP_062883 5' arm      3' arm
3309 - 4044 90 21.5 -25.3 NP_062883 5' arm      3' arm
3310 - 4178 90 21 -23.7 NP_062883 5' arm      3' arm
3311 - 4722 89 24 -24.3 NP_062883 5' arm      3' arm
3312 - 5272 88 21.5 -27.52 NP_062883 5' arm      3' arm
3313 - 5489 90 21 -27.3 NP_062883 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.