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| GenBank Identifier | RefSeq Acc. | Name |
| 60115391 | NC_006852.1 | Murine hepatitis virus strain JHM |
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| ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF |
Known viral miRNA
|
Match to own genomic region# | Target prediction with RNAhybrid |
| 31588 | - | 1258 | 90 | 19 | -19.6 | YP_209230 | 5' arm 3' arm | ||
| 31578 | + | 12497 | 87 | 20 | -22.9 | YP_209229 | 5' arm 3' arm | ||
| 31580 | + | 15591 | 89 | 24.5 | -21.9 | YP_209229 | 5' arm 3' arm | ||
| 31579 | + | 15207 | 88 | 21.5 | -25.8 | YP_209229 | 5' arm 3' arm | ||
| 31584 | + | 21978 | 90 | 23 | -31.7 | YP_209231 | 5' arm 3' arm | ||
| 31583 | + | 20793 | 85 | 22.5 | -20.6 | YP_209229 | 5' arm 3' arm | ||
| 31581 | + | 18649 | 83 | 22 | -22.9 | YP_209229 | 5' arm 3' arm | ||
| 31582 | + | 19753 | 90 | 20.5 | -20.8 | YP_209229 | 5' arm 3' arm | ||
| 31585 | + | 25351 | 70 | 20.5 | -26.6 | YP_209233 | 5' arm 3' arm | ||
| 31577 | + | 9525 | 88 | 20 | -24.7 | YP_209230 | 5' arm 3' arm | ||
| 31575 | + | 8543 | 90 | 20 | -19.4 | YP_209230 | 5' arm 3' arm | ||
| 31576 | + | 9322 | 90 | 23 | -21.9 | YP_209229 | 5' arm 3' arm | ||
| 31572 | + | 4318 | 90 | 22.5 | -27.7 | YP_209229 | 5' arm 3' arm | ||
| 31570 | + | 2164 | 89 | 20.5 | -23.7 | YP_209229 | 5' arm 3' arm | ||
| 31571 | + | 4206 | 90 | 20.5 | -21.1 | YP_209230 | 5' arm 3' arm | ||
| 31566 | + | 374 | 89 | 20 | -27.8 | YP_209230 | 5' arm 3' arm | ||
| 31567 | + | 466 | 89 | 20 | -27.6 | YP_209230 | 5' arm 3' arm | ||
| 31569 | + | 1736 | 90 | 20 | -26.1 | YP_209229 | 5' arm 3' arm | ||
| 31573 | + | 6710 | 90 | 27 | -23.1 | YP_209229 | 5' arm 3' arm | ||
| 31574 | + | 6848 | 90 | 25.5 | -29 | YP_209229 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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