miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
48843534 NC_005905.1 Neodiprion sertifer nucleopolyhedrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28312 - 8716 89 25.5 -21.4 5' arm      3' arm
28329 - 49465 88 23.5 -31.5 5' arm      3' arm
28328 - 49241 89 19.5 -23.4 5' arm      3' arm
28327 - 49151 89 19.5 -26 5' arm      3' arm
28326 - 21826 88 24.5 -26.1 5' arm      3' arm
28324 - 19560 78 24 -33.5 5' arm      3' arm
28325 - 19728 90 23 -32.8 5' arm      3' arm
28323 - 17803 89 28.5 -20.2 5' arm      3' arm
28322 - 17518 89 27 -24.2 5' arm      3' arm
28311 + 49378 88 25.5 -20.4 5' arm      3' arm
28310 + 49288 89 28.5 -30.9 5' arm      3' arm
28309 + 49198 89 28.5 -29 5' arm      3' arm
28301 + 19504 86 27.5 -23.8 5' arm      3' arm
28302 + 19635 89 25.5 -29.2 5' arm      3' arm
28305 + 20038 89 25.5 -21.9 5' arm      3' arm
28304 + 19920 89 24 -23 5' arm      3' arm
28303 + 19800 89 23.5 -20.2 5' arm      3' arm
28306 + 27325 87 24 -21.7 5' arm      3' arm
28307 + 49018 89 28.5 -26 5' arm      3' arm
28308 + 49108 89 28.5 -25.7 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.