miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
22091104 NC_004084.1 Virus PhiCh1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16283 + 16699 90 19.5 -24.4 5' arm      3' arm
16258 + 3323 85 19 -21.9 5' arm      3' arm
16428 - 34125 87 19 -23.6 5' arm      3' arm
16373 - 3423 89 24 -28.3 5' arm      3' arm
16506 - 58465 89 26.5 -29.5 NP_665918 5' arm      3' arm
16249 + 409 89 22 -24.2 NP_665919 5' arm      3' arm
16250 + 526 90 19 -22 NP_665919 5' arm      3' arm
16252 + 1571 90 21 -21.5 NP_665920 5' arm      3' arm
16251 + 1178 89 20.5 -31.3 NP_665920 5' arm      3' arm
16253 + 1671 89 19 -22.1 NP_665920 5' arm      3' arm
16369 - 1268 89 20 -20.9 NP_665920 5' arm      3' arm
16368 - 878 87 20.5 -28.2 NP_665920 5' arm      3' arm
16371 - 2174 89 22 -25.2 NP_665920 5' arm      3' arm
16370 - 1976 86 21.5 -20.9 NP_665920 5' arm      3' arm
16255 + 2631 90 20 -19.7 NP_665921 5' arm      3' arm
16256 + 2816 90 19 -23.2 NP_665922 5' arm      3' arm
16372 - 2903 85 20.5 -23.9 NP_665922 5' arm      3' arm
16257 + 3028 87 21.5 -23.9 NP_665923 5' arm      3' arm
16374 - 3742 90 20.5 -26 NP_665924 5' arm      3' arm
16259 + 4181 85 19 -27.9 NP_665924 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.