miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629900 NC_001866.1 Avian myelocytomatosis virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6696 + 2042 86 22 -34.4 NP_045935 5' arm      3' arm
6699 - 2127 87 20.5 -30 NP_045935 5' arm      3' arm
6698 - 1709 88 20 -25.7 NP_045935 5' arm      3' arm
6697 - 1109 90 19.5 -22.1 NP_045935 5' arm      3' arm
6695 + 814 89 19 -27.3 NP_045935 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.