miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629258 NC_001795.1 Human spumaretrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5096 + 9458 90 22 -26.7 NP_044453 5' arm      3' arm
5097 + 10641 89 23 -23.5 NP_044455 5' arm      3' arm
5098 - 142 89 20.5 -21 NP_044455 5' arm      3' arm
5099 - 2794 90 22 -20.5 NP_044449 5' arm      3' arm
5100 - 9313 89 19 -21.1 NP_044451 5' arm      3' arm
5101 - 9545 89 22.5 -23.3 NP_044452 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.