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| GenBank Identifier | RefSeq Acc. | Name |
| 20564151 | NC_003839.1 | Tomato ringspot virus RNA 2 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15259 | - | 612 | 84 | 19.5 | -25.7 | NP_620762 | 5' arm 3' arm | ||
| 15272 | + | 4511 | 84 | 19.5 | -20.93 | NP_620765 | 5' arm 3' arm | ||
| 15267 | + | 1582 | 89 | 20 | -28.4 | NP_620765 | 5' arm 3' arm | ||
| 15266 | + | 919 | 86 | 20 | -20.9 | NP_620765 | 5' arm 3' arm | ||
| 15263 | + | 129 | 89 | 20 | -26.3 | NP_620765 | 5' arm 3' arm | ||
| 15262 | - | 3167 | 86 | 20 | -19.8 | NP_620762 | 5' arm 3' arm | ||
| 15251 | + | 129 | 89 | 20 | -26.3 | NP_620762 | 5' arm 3' arm | ||
| 15278 | - | 870 | 81 | 20 | -23.3 | NP_620765 | 5' arm 3' arm | ||
| 15260 | - | 738 | 86 | 20.5 | -32.7 | NP_620762 | 5' arm 3' arm | ||
| 15258 | - | 293 | 89 | 20.5 | -22.1 | NP_620762 | 5' arm 3' arm | ||
| 15275 | - | 293 | 89 | 20.5 | -22.1 | NP_620765 | 5' arm 3' arm | ||
| 15255 | + | 2391 | 86 | 20.5 | -21.6 | NP_620762 | 5' arm 3' arm | ||
| 15276 | - | 591 | 85 | 20.5 | -24.8 | NP_620765 | 5' arm 3' arm | ||
| 15252 | + | 324 | 90 | 21 | -29.3 | NP_620762 | 5' arm 3' arm | ||
| 15253 | + | 1188 | 89 | 21 | -24.3 | NP_620762 | 5' arm 3' arm | ||
| 15264 | + | 324 | 90 | 21 | -29.3 | NP_620765 | 5' arm 3' arm | ||
| 15254 | + | 2257 | 88 | 21.5 | -21.7 | NP_620762 | 5' arm 3' arm | ||
| 15269 | + | 2399 | 89 | 22 | -22.21 | NP_620765 | 5' arm 3' arm | ||
| 15268 | + | 1916 | 90 | 22 | -20.4 | NP_620765 | 5' arm 3' arm | ||
| 15277 | - | 741 | 89 | 22 | -29.6 | NP_620765 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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