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| GenBank Identifier | RefSeq Acc. | Name |
| 20564169 | NC_003845.1 | Tobacco streak virus RNA 3 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15282 | + | 1769 | 86 | 19.5 | -27.7 | NP_620774 | 5' arm 3' arm | ||
| 15281 | + | 2558 | 90 | 27.5 | -23.9 | NP_620772 | 5' arm 3' arm | ||
| 15283 | + | 2078 | 87 | 19.5 | -22.7 | 5' arm 3' arm | |||
| 15284 | - | 1492 | 89 | 19 | -22 | NP_620774 | 5' arm 3' arm | ||
| 15280 | + | 63 | 90 | 21.5 | -21.9 | NP_620772 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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