miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626440 NC_001434.1 Hepatitis E virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2447 + 329 87 22 -19.9 NP_056779 5' arm      3' arm
2448 + 3870 90 20 -25.7 NP_056779 5' arm      3' arm
2449 + 3994 90 22.5 -24.9 NP_056786 5' arm      3' arm
2450 + 4452 90 21.5 -19.6 NP_056779 5' arm      3' arm
2451 + 6602 90 24 -29.5 NP_056788 5' arm      3' arm
2452 - 3964 89 19.5 -26.2 NP_056786 5' arm      3' arm
2453 - 6682 70 21.5 -26.42 NP_056788 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.