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| GenBank Identifier | RefSeq Acc. | Name |
| 20087046 | NC_003535.1 | Cowpea mottle virus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 14763 | - | 3854 | 85 | 19.5 | -27.4 | 5' arm 3' arm | |||
| 14758 | + | 131 | 90 | 20.5 | -20.1 | NP_613267 | 5' arm 3' arm | ||
| 14759 | + | 846 | 90 | 20.5 | -24.1 | NP_619521 | 5' arm 3' arm | ||
| 14760 | + | 3348 | 84 | 20.5 | -27.2 | NP_613271 | 5' arm 3' arm | ||
| 14762 | - | 2252 | 87 | 23 | -20.1 | NP_619521 | 5' arm 3' arm | ||
| 14761 | + | 3770 | 85 | 23.5 | -22.3 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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