miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38639784 NC_005266.1 Raspberry ringspot virus RNA 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24774 + 1459 90 25.5 -22.8 NP_944487 5' arm      3' arm
24780 - 1041 90 21 -23.7 NP_944487 5' arm      3' arm
24778 - 435 86 21.5 -21.8 NP_944487 5' arm      3' arm
24781 - 4230 88 20.5 -20 NP_944487 5' arm      3' arm
24779 - 770 77 21 -28.5 NP_944487 5' arm      3' arm
24771 + 560 81 19 -27.6 NP_944487 5' arm      3' arm
24770 + 177 89 19 -20.2 NP_944487 5' arm      3' arm
24777 + 4389 90 20 -20.4 NP_944487 5' arm      3' arm
24775 + 2485 89 23 -27.5 NP_944487 5' arm      3' arm
24773 + 1353 89 20 -26.2 NP_944487 5' arm      3' arm
24776 + 3817 86 20.5 -22.2 NP_944487 5' arm      3' arm
24772 + 686 89 20 -23 NP_944487 5' arm      3' arm
24785 + 1234 88 19 -21.01 NP_944488 5' arm      3' arm
24784 + 727 89 19 -20.8 NP_944488 5' arm      3' arm
24786 + 1940 90 20 -22.6 NP_944488 5' arm      3' arm
24783 + 588 85 20.5 -20.6 NP_944488 5' arm      3' arm
24787 + 2351 90 22 -25.6 NP_944488 5' arm      3' arm
24782 + 380 89 21.5 -29.3 NP_944488 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.