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| GenBank Identifier | RefSeq Acc. | Name |
| 41057437 | NC_005337.1 | Bovine papular stomatitis virus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 25941 | - | 117957 | 90 | 27.5 | -26.5 | NP_958026 | 5' arm 3' arm | ||
| 25657 | + | 83894 | 89 | 26.5 | -24.3 | NP_957989 | 5' arm 3' arm | ||
| 25676 | + | 91945 | 89 | 26 | -22.1 | NP_957995 | 5' arm 3' arm | ||
| 25600 | + | 53972 | 89 | 26 | -28.3 | NP_957964 | 5' arm 3' arm | ||
| 25662 | + | 87357 | 90 | 25.5 | -25.4 | NP_957992 | 5' arm 3' arm | ||
| 25534 | + | 18588 | 90 | 25.5 | -19.9 | NP_957928 | 5' arm 3' arm | ||
| 25735 | + | 130195 | 90 | 25.5 | -33.4 | NP_958037 | 5' arm 3' arm | ||
| 25568 | + | 35211 | 83 | 25.5 | -30.7 | NP_957941 | 5' arm 3' arm | ||
| 25685 | + | 97115 | 90 | 25 | -27.4 | NP_958004 | 5' arm 3' arm | ||
| 25678 | + | 93438 | 90 | 25 | -23.5 | NP_957997 | 5' arm 3' arm | ||
| 25720 | + | 123195 | 86 | 25 | -28.9 | NP_958032 | 5' arm 3' arm | ||
| 25512 | + | 7285 | 90 | 24.5 | -31 | NP_957917 | 5' arm 3' arm | ||
| 25553 | + | 26749 | 89 | 24.5 | -23 | NP_957934 | 5' arm 3' arm | ||
| 25699 | + | 109811 | 90 | 24.5 | -23.7 | NP_958015 | 5' arm 3' arm | ||
| 25733 | + | 129415 | 87 | 24.5 | -28.8 | NP_958037 | 5' arm 3' arm | ||
| 25716 | + | 120665 | 90 | 24 | -21 | NP_958030 | 5' arm 3' arm | ||
| 25647 | + | 80814 | 88 | 24 | -26.2 | NP_957986 | 5' arm 3' arm | ||
| 25668 | + | 90027 | 89 | 24 | -20.3 | NP_957995 | 5' arm 3' arm | ||
| 25540 | + | 20642 | 90 | 24 | -26 | NP_957929 | 5' arm 3' arm | ||
| 25637 | + | 78058 | 90 | 24 | -24.4 | NP_957983 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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