miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41057437 NC_005337.1 Bovine papular stomatitis virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
25968 - 133054 89 24 -29.3 NP_958040 5' arm      3' arm
25949 - 122424 90 22 -26.6 NP_958031 5' arm      3' arm
25952 - 124264 85 21.5 -27.9 NP_958032 5' arm      3' arm
25744 - 564 87 20 -20.3 NP_958041 5' arm      3' arm
25963 - 130081 90 21 -27.2 NP_958037 5' arm      3' arm
25962 - 129959 89 20 -21.3 NP_958037 5' arm      3' arm
25964 - 130932 90 19.5 -27.1 NP_958038 5' arm      3' arm
25955 - 125323 89 22.5 -22.6 NP_958034 5' arm      3' arm
25961 - 128811 90 20.5 -26 NP_958036 5' arm      3' arm
25950 - 123173 90 22 -26.8 NP_958032 5' arm      3' arm
25956 - 125470 88 20 -22.5 NP_958034 5' arm      3' arm
25960 - 126484 90 21.5 -20.2 NP_958034 5' arm      3' arm
25965 - 131056 89 22.5 -23.2 NP_958038 5' arm      3' arm
25958 - 126070 90 19 -25.8 NP_958034 5' arm      3' arm
25969 - 134388 90 21 -26.7 5' arm      3' arm
25959 - 126341 88 22 -19.8 NP_958034 5' arm      3' arm
25954 - 124723 89 23.5 -30.2 NP_958033 5' arm      3' arm
25948 - 122308 87 22 -28.4 NP_958031 5' arm      3' arm
25966 - 132007 87 21 -21 NP_958038 5' arm      3' arm
25967 - 132623 89 19.5 -27.7 NP_958039 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.