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GenBank Identifier | RefSeq Acc. | Name |
30027774 | NC_004735.1 | Bacteriophage RM 378 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
20985 | + | 28951 | 89 | 21 | -34.54 | NP_835619 | 5' arm 3' arm | ||
21000 | - | 199 | 77 | 28.5 | -32.3 | NP_835588 | 5' arm 3' arm | ||
21025 | - | 125763 | 90 | 20.5 | -31.1 | NP_835728 | 5' arm 3' arm | ||
21029 | - | 127455 | 87 | 19.5 | -30.4 | NP_835729 | 5' arm 3' arm | ||
21016 | - | 83114 | 90 | 21.5 | -29.7 | NP_835684 | 5' arm 3' arm | ||
21009 | - | 39007 | 85 | 23 | -29.7 | NP_835630 | 5' arm 3' arm | ||
20992 | + | 45469 | 84 | 19 | -27.7 | NP_835645 | 5' arm 3' arm | ||
21008 | - | 37937 | 90 | 19 | -27 | NP_835627 | 5' arm 3' arm | ||
20987 | + | 38524 | 90 | 23.5 | -26.9 | NP_835629 | 5' arm 3' arm | ||
20990 | + | 39835 | 90 | 24.5 | -26.9 | NP_835631 | 5' arm 3' arm | ||
21003 | - | 11976 | 88 | 19.5 | -26.8 | 5' arm 3' arm | |||
21010 | - | 40527 | 85 | 19.5 | -26.8 | NP_835632 | 5' arm 3' arm | ||
20988 | + | 38636 | 85 | 22.5 | -25.82 | NP_835629 | 5' arm 3' arm | ||
20986 | + | 34063 | 88 | 21.5 | -25.8 | NP_835625 | 5' arm 3' arm | ||
21015 | - | 73460 | 86 | 19 | -25.6 | NP_835670 | 5' arm 3' arm | ||
21017 | - | 83294 | 90 | 21 | -24.9 | NP_835684 | 5' arm 3' arm | ||
20989 | + | 39022 | 90 | 23.5 | -24.9 | NP_835630 | 5' arm 3' arm | ||
21019 | - | 84873 | 87 | 21 | -24.1 | NP_835685 | 5' arm 3' arm | ||
21026 | - | 125904 | 86 | 20.5 | -23.9 | NP_835728 | 5' arm 3' arm | ||
21014 | - | 72470 | 90 | 22.5 | -23.7 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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