miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18640469 NC_003390.1 Cyanophage P60

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13028 + 20964 87 20.5 -22.8 NP_570341 5' arm      3' arm
13029 + 21837 90 19.5 -29.1 NP_570342 5' arm      3' arm
13030 + 22559 88 21 -21.9 NP_570343 5' arm      3' arm
13031 + 22885 90 21.5 -22.4 NP_570344 5' arm      3' arm
13032 + 25882 81 20 -21.3 NP_570347 5' arm      3' arm
13033 + 26938 89 24 -24.4 NP_570348 5' arm      3' arm
13034 + 28086 90 19.5 -20 NP_570351 5' arm      3' arm
13035 + 28363 87 23 -21.06 NP_570351 5' arm      3' arm
13036 + 29165 89 19 -23.5 NP_570351 5' arm      3' arm
13037 + 29437 90 25.5 -24.7 NP_570352 5' arm      3' arm
13038 + 29533 90 21 -21.5 NP_570352 5' arm      3' arm
13039 + 32347 90 21 -22.7 NP_570359 5' arm      3' arm
13040 + 33420 87 19.5 -22.1 NP_570361 5' arm      3' arm
13041 + 34017 89 19 -28 5' arm      3' arm
13042 + 37793 89 20 -22 NP_570367 5' arm      3' arm
13043 + 37912 86 21 -22.1 NP_570367 5' arm      3' arm
13044 + 38305 88 23 -22.5 NP_570367 5' arm      3' arm
13045 + 38801 86 20.5 -19.9 NP_570369 5' arm      3' arm
13046 + 39465 86 21 -20.6 NP_570370 5' arm      3' arm
13047 + 42552 89 21 -23.1 NP_570379 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.