miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18653809 NC_003401.1 Cercopithecine herpesvirus 17

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13210 - 32603 89 19 -20.9 NP_570761 5' arm      3' arm
13104 + 15017 90 19 -30.6 NP_570750 5' arm      3' arm
13193 - 15134 87 19 -21.8 NP_570750 5' arm      3' arm
13138 + 85376 87 19 -26.9 NP_570802 5' arm      3' arm
13178 + 133574 90 19 -21.6 5' arm      3' arm
13196 - 16382 82 19 -21.9 NP_570750 5' arm      3' arm
13230 - 89000 90 19 -28.5 NP_570804 5' arm      3' arm
13189 - 13119 87 19 -22.1 NP_570749 5' arm      3' arm
13130 + 58070 88 19 -21 NP_570782 5' arm      3' arm
13097 + 726 90 19 -21.6 5' arm      3' arm
13215 - 43248 88 19 -28.9 NP_570765 5' arm      3' arm
13214 - 42072 90 19 -26.6 NP_570765 5' arm      3' arm
13128 + 51648 87 19 -21.8 NP_570775 5' arm      3' arm
13144 + 102868 89 19 -22.92 NP_570812 5' arm      3' arm
13221 - 63930 90 19 -22.7 NP_570786 5' arm      3' arm
13106 + 18320 86 19 -23.2 NP_570751 5' arm      3' arm
13219 - 57876 90 19.5 -21.8 NP_570781 5' arm      3' arm
13227 - 78238 84 19.5 -22.4 NP_570797 5' arm      3' arm
13101 + 13004 90 19.5 -24.1 NP_570749 5' arm      3' arm
13235 - 100113 88 19.5 -21.4 NP_570812 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.