miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20178632 NC_003678.1 Pestivirus Giraffe-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
14945 + 4378 88 23 -24.2 NP_620053 5' arm      3' arm
14946 + 11189 90 21 -20.3 NP_620053 5' arm      3' arm
14948 - 6445 90 22 -23.1 NP_620053 5' arm      3' arm
14947 - 574 90 24.5 -25.7 NP_620053 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.