miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26461 + 7273 87 20.5 -24.5 NP_958679 5' arm      3' arm
26462 + 8231 84 20.5 -21.6 NP_958679 5' arm      3' arm
26463 + 8891 89 19.5 -23.7 NP_958679 5' arm      3' arm
26464 + 9378 90 21 -19.4 NP_958679 5' arm      3' arm
26465 + 9502 85 21 -23.5 NP_958679 5' arm      3' arm
26466 + 9690 89 20.5 -24.3 NP_958679 5' arm      3' arm
26467 + 10690 90 20 -26 NP_958679 5' arm      3' arm
26468 + 10817 90 22 -23.3 NP_958679 5' arm      3' arm
26469 + 11123 86 25 -26.1 NP_958679 5' arm      3' arm
26470 + 11480 90 20.5 -28.5 NP_958679 5' arm      3' arm
26471 + 11890 90 23.5 -22.6 NP_958679 5' arm      3' arm
26472 + 12160 90 21 -19.8 NP_958679 5' arm      3' arm
26473 + 12490 89 21 -25.4 NP_958680 5' arm      3' arm
26474 + 12797 89 20.5 -20.9 NP_958680 5' arm      3' arm
26475 + 13045 90 20.5 -21.3 NP_958680 5' arm      3' arm
26476 + 13143 90 21 -24.5 NP_958680 5' arm      3' arm
26477 + 13275 88 22 -27.1 NP_958680 5' arm      3' arm
26478 + 13523 83 20 -27 NP_958680 5' arm      3' arm
26479 + 13862 87 21 -21.3 NP_958680 5' arm      3' arm
26480 + 13988 82 21 -20.02 NP_958680 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.