miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
33867950 NC_005074.1 Helicobasidium mompa No.17 dsRNA virus segment L

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
22510 - 2556 84 19 -23 NP_898832 5' arm      3' arm
22504 + 1069 89 19 -19.6 NP_898832 5' arm      3' arm
22505 + 1662 90 19 -22.7 NP_898832 5' arm      3' arm
22506 + 3310 89 19 -20.1 NP_898833 5' arm      3' arm
22503 + 823 89 19.5 -19.5 NP_898832 5' arm      3' arm
22508 - 1515 85 19.5 -26.7 NP_898832 5' arm      3' arm
22514 + 1243 89 20 -22.3 5' arm      3' arm
22507 - 652 89 20.5 -25.2 NP_898832 5' arm      3' arm
22511 - 2631 73 20.5 -31.74 NP_898833 5' arm      3' arm
22515 - 783 88 20.5 -20.9 5' arm      3' arm
22513 + 146 88 21 -19.66 5' arm      3' arm
22509 - 1691 89 21.5 -29.6 NP_898832 5' arm      3' arm
22512 - 3159 90 22 -24.9 NP_898833 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.