miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29366701 NC_004665.1 Pseudomonas phage gh-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17964 + 157 90 23.5 -29.4 5' arm      3' arm
17992 + 36989 89 21 -27.7 5' arm      3' arm
17993 + 37200 89 22 -22.3 5' arm      3' arm
17994 - 528 82 22.5 -26.4 5' arm      3' arm
17995 - 1075 90 23 -20.3 5' arm      3' arm
17965 + 445 89 22 -26.1 5' arm      3' arm
17963 + 57 89 22 -22.3 5' arm      3' arm
17998 - 2570 85 24.5 -24.6 NP_813747 5' arm      3' arm
17997 - 2253 89 19.5 -28.52 NP_813747 5' arm      3' arm
17968 + 3525 90 22.5 -22 NP_813747 5' arm      3' arm
17967 + 3047 90 21 -23.3 NP_813747 5' arm      3' arm
18000 - 3238 87 19 -23.69 NP_813747 5' arm      3' arm
17966 + 1830 89 21 -25.1 NP_813747 5' arm      3' arm
17999 - 2913 88 20 -22.4 NP_813747 5' arm      3' arm
17996 - 2058 85 22.5 -20 NP_813747 5' arm      3' arm
18001 - 3836 89 26 -26.4 NP_813748 5' arm      3' arm
18002 - 3967 78 21 -25.02 NP_813749 5' arm      3' arm
17969 + 4387 86 19.5 -25.3 NP_813750 5' arm      3' arm
18003 - 4490 90 21 -24.6 NP_813750 5' arm      3' arm
17971 + 5199 90 21 -21 NP_813751 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.