miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18301 + 32960 89 19 -28.2 NP_817485 5' arm      3' arm
18314 + 40556 90 19 -28.8 NP_817504 5' arm      3' arm
18318 + 46494 89 19 -21 NP_817518 5' arm      3' arm
18257 + 7000 88 19 -19.7 NP_817461 5' arm      3' arm
18330 + 60004 85 19 -25.8 NP_817549 5' arm      3' arm
18286 + 24799 85 19 -26 NP_817476 5' arm      3' arm
18281 + 20439 90 19 -31.5 NP_817473 5' arm      3' arm
18263 + 9632 86 19 -34.3 5' arm      3' arm
18264 + 11275 90 19 -23.8 NP_817467 5' arm      3' arm
18344 + 67327 89 19 -21.1 NP_817564 5' arm      3' arm
18295 + 29553 88 19 -25.9 NP_817479 5' arm      3' arm
18265 + 11592 90 19 -24.4 NP_817468 5' arm      3' arm
18331 + 60966 83 19 -21.2 NP_817550 5' arm      3' arm
18310 + 36673 90 19 -22.4 NP_817496 5' arm      3' arm
18279 + 18845 87 19 -28.1 NP_817473 5' arm      3' arm
18338 + 64230 89 19 -24.8 NP_817558 5' arm      3' arm
18306 + 34993 89 19 -20.4 NP_817490 5' arm      3' arm
18249 + 773 87 19 -20.7 NP_817453 5' arm      3' arm
18252 + 3051 90 19 -24 NP_817458 5' arm      3' arm
18267 + 13492 90 19 -25.9 NP_817470 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.