miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566021 NC_004682.1 Mycobacteriophage Bxz2 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18647 - 591 90 20 -24.2 NP_817592 5' arm      3' arm
18545 + 5291 89 19 -21.2 NP_817599 5' arm      3' arm
18550 + 8167 89 19 -24.4 NP_817601 5' arm      3' arm
18553 + 8951 87 19 -25.1 NP_817602 5' arm      3' arm
18554 + 9606 90 22.5 -27.8 NP_817602 5' arm      3' arm
18555 + 10301 83 20.5 -28.4 NP_817603 5' arm      3' arm
18556 + 10392 88 20 -24.1 NP_817603 5' arm      3' arm
18557 + 10807 89 20 -25 NP_817603 5' arm      3' arm
18560 + 11879 81 20 -22.5 NP_817605 5' arm      3' arm
18551 + 8320 90 20 -20.8 NP_817601 5' arm      3' arm
18546 + 5403 87 20 -22.8 NP_817599 5' arm      3' arm
18552 + 8654 90 21 -24.7 NP_817601 5' arm      3' arm
18543 + 4698 89 20 -26.9 NP_817599 5' arm      3' arm
18544 + 4843 90 20 -29.8 NP_817599 5' arm      3' arm
18539 + 188 89 19.5 -26.7 5' arm      3' arm
18542 + 4131 87 19.5 -19.4 5' arm      3' arm
18541 + 3587 88 19 -21.4 NP_817597 5' arm      3' arm
18547 + 5869 90 22.5 -21.9 NP_817599 5' arm      3' arm
18549 + 7990 89 22.5 -23.9 NP_817601 5' arm      3' arm
18548 + 7160 87 21 -25.9 NP_817601 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.