miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566021 NC_004682.1 Mycobacteriophage Bxz2 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18647 - 591 90 20 -24.2 NP_817592 5' arm      3' arm
18540 + 557 90 23 -28.7 NP_817592 5' arm      3' arm
18650 - 1208 87 19.5 -32.7 NP_817593 5' arm      3' arm
18649 - 1014 86 21.5 -22.4 NP_817593 5' arm      3' arm
18652 - 1623 84 20 -26.2 NP_817594 5' arm      3' arm
18651 - 1483 88 20 -21 NP_817594 5' arm      3' arm
18653 - 2543 88 20 -22.3 NP_817595 5' arm      3' arm
18655 - 3124 89 23 -23.9 NP_817596 5' arm      3' arm
18654 - 2902 88 20 -21.1 NP_817596 5' arm      3' arm
18656 - 3276 81 22.5 -19.6 NP_817596 5' arm      3' arm
18541 + 3587 88 19 -21.4 NP_817597 5' arm      3' arm
18659 - 4471 89 23 -21.2 NP_817598 5' arm      3' arm
18658 - 4319 87 23.5 -23.7 NP_817598 5' arm      3' arm
18544 + 4843 90 20 -29.8 NP_817599 5' arm      3' arm
18662 - 5432 90 19.5 -25.2 NP_817599 5' arm      3' arm
18547 + 5869 90 22.5 -21.9 NP_817599 5' arm      3' arm
18661 - 5252 87 21.5 -26.8 NP_817599 5' arm      3' arm
18546 + 5403 87 20 -22.8 NP_817599 5' arm      3' arm
18663 - 5591 89 24.5 -22.3 NP_817599 5' arm      3' arm
18545 + 5291 89 19 -21.2 NP_817599 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.