miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566407 NC_004686.1 Mycobacteriophage Che9d virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
19636 + 49804 85 19 -23.2 NP_818067 5' arm      3' arm
19601 + 26678 87 19 -22.7 NP_818008 5' arm      3' arm
19578 + 13675 90 19 -24.4 NP_817991 5' arm      3' arm
19564 + 6969 90 19 -23.8 NP_817985 5' arm      3' arm
19638 + 50533 90 19 -21.3 NP_955478 5' arm      3' arm
19621 + 40268 89 19 -22.7 NP_818041 5' arm      3' arm
19711 - 46846 89 19 -22.9 NP_818058 5' arm      3' arm
19585 + 16865 89 19 -22 NP_817996 5' arm      3' arm
19583 + 16393 89 19 -21.4 NP_817996 5' arm      3' arm
19559 + 3009 89 19 -21 NP_817977 5' arm      3' arm
19705 - 43837 89 19 -30 NP_818049 5' arm      3' arm
19602 + 27116 90 19 -24.1 NP_818009 5' arm      3' arm
19659 - 13854 86 19 -20.9 NP_817992 5' arm      3' arm
19693 - 37532 90 19 -25.1 NP_818033 5' arm      3' arm
19635 + 49317 88 19 -25.7 NP_818065 5' arm      3' arm
19703 - 43388 90 19 -25.3 NP_818049 5' arm      3' arm
19668 - 22455 90 19 -24.9 NP_817998 5' arm      3' arm
19597 + 24588 87 19 -19.8 NP_818003 5' arm      3' arm
19568 + 8840 90 19.5 -28.4 NP_817988 5' arm      3' arm
19640 + 51394 90 19.5 -20.6 NP_955482 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.