miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
28144357 NC_004553.1 Turnip rosette virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17694 + 3850 87 19.5 -27.4 NP_778218 5' arm      3' arm
17695 - 1824 90 20 -27.1 NP_778217 5' arm      3' arm
17696 - 3908 86 21 -27.8 NP_778218 5' arm      3' arm
17693 + 3268 88 22.5 -26.8 NP_778218 5' arm      3' arm
17692 + 624 90 23.5 -27.6 NP_778215 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.