miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
46402086 NC_005857.1 Bacteriophage phiKO2 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27358 - 2044 88 19.5 -21.3 YP_006582 5' arm      3' arm
27343 + 16544 89 19 -27.2 YP_006601 5' arm      3' arm
27346 + 18771 88 24.5 -23.7 YP_006601 5' arm      3' arm
27345 + 18621 89 21 -22.7 YP_006601 5' arm      3' arm
27348 + 22745 90 21 -21.8 YP_006601 5' arm      3' arm
27347 + 22435 88 20.5 -20.5 YP_006601 5' arm      3' arm
27350 + 26735 82 23 -24.29 YP_006604 5' arm      3' arm
27349 + 25356 88 19.5 -20.5 YP_006601 5' arm      3' arm
27351 + 30084 90 21.5 -20.8 YP_006606 5' arm      3' arm
27342 + 16367 88 19.5 -24.2 YP_006601 5' arm      3' arm
27344 + 17316 85 21 -21.7 YP_006601 5' arm      3' arm
27340 + 10873 87 20.5 -20 YP_006595 5' arm      3' arm
27332 + 2271 88 19.5 -28.6 YP_006583 5' arm      3' arm
27333 + 2580 88 19.5 -30.3 YP_006584 5' arm      3' arm
27334 + 3148 90 19.5 -23.9 YP_006584 5' arm      3' arm
27337 + 7157 89 21.5 -20.4 YP_006590 5' arm      3' arm
27338 + 8086 83 21 -29.5 YP_006592 5' arm      3' arm
27336 + 6844 90 20 -25.6 YP_006589 5' arm      3' arm
27339 + 9244 81 19 -25.3 YP_006595 5' arm      3' arm
27341 + 13897 87 21 -25.8 YP_006598 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.