miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
14602241 NC_002816.1 Cydia pomonella granulovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
11196 - 56590 90 19 -27.2 NP_148854 5' arm      3' arm
11198 - 77769 89 21.5 -25.7 NP_148879 5' arm      3' arm
11193 - 31701 90 19 -25.6 NP_148821 5' arm      3' arm
11199 - 82022 90 21 -25.02 NP_148883 5' arm      3' arm
11174 + 29446 89 21.5 -24.6 NP_148817 5' arm      3' arm
11194 - 34132 88 19 -24.2 NP_148824 5' arm      3' arm
11177 + 40048 90 24 -23.9 NP_148832 5' arm      3' arm
11184 + 80770 89 23 -23.8 NP_148882 5' arm      3' arm
11187 - 10605 88 26.5 -23.43 NP_148799 5' arm      3' arm
11186 + 86802 88 20.5 -23.2 NP_148888 5' arm      3' arm
11183 + 58165 86 22.5 -23 5' arm      3' arm
11179 + 49282 90 22.5 -22.9 NP_148844 5' arm      3' arm
11188 - 11981 76 21.5 -22.7 5' arm      3' arm
11173 + 23732 90 19.5 -22.7 NP_148813 5' arm      3' arm
11172 + 22431 84 23 -22.4 5' arm      3' arm
11192 - 29445 90 19.5 -22.3 NP_148817 5' arm      3' arm
11202 - 93201 89 22 -22.3 NP_148895 5' arm      3' arm
11201 - 84293 87 19.5 -22 NP_148885 5' arm      3' arm
11178 + 49181 90 20 -22 NP_148844 5' arm      3' arm
11185 + 83660 80 24.5 -21.8 NP_148885 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.