miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630386 NC_001900.1 Mycobacteriophage D29

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7161 + 2176 87 21.5 -32.4 NP_046821 5' arm      3' arm
7162 + 2366 90 22.5 -31.9 NP_046822 5' arm      3' arm
7163 + 3356 90 19.5 -20.1 NP_046824 5' arm      3' arm
7164 + 3500 88 20 -25 NP_046824 5' arm      3' arm
7165 + 4449 89 22 -23.5 5' arm      3' arm
7166 + 5563 87 21 -25.8 NP_046825 5' arm      3' arm
7167 + 6690 90 19 -23.9 NP_046827 5' arm      3' arm
7168 + 7358 87 20.5 -34.1 NP_046828 5' arm      3' arm
7169 + 7499 89 20 -24.5 NP_046828 5' arm      3' arm
7170 + 7920 90 19 -20.86 NP_046828 5' arm      3' arm
7171 + 8552 90 21 -24.2 NP_046828 5' arm      3' arm
7172 + 9343 87 21 -31.1 NP_046829 5' arm      3' arm
7173 + 9783 87 20.5 -20.4 NP_046829 5' arm      3' arm
7174 + 10725 82 20 -24.7 NP_046830 5' arm      3' arm
7175 + 11042 90 20.5 -25.4 NP_046830 5' arm      3' arm
7176 + 11925 81 19 -20.6 NP_046831 5' arm      3' arm
7177 + 12235 88 19 -31.2 NP_046832 5' arm      3' arm
7178 + 12550 87 19.5 -23.9 NP_046832 5' arm      3' arm
7179 + 12795 87 22.5 -23.91 NP_046832 5' arm      3' arm
7180 + 13358 90 21 -24 NP_046834 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.