miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9632353 NC_002041.1 Soil-borne wheat mosaic virus RNA1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8295 + 2869 90 22 -29.7 NP_049336 5' arm      3' arm
8294 + 145 90 20.5 -20.92 NP_049336 5' arm      3' arm
8296 + 4098 87 19.5 -21.8 NP_049335 5' arm      3' arm
8298 + 1667 86 25 -23.7 NP_049338 5' arm      3' arm
8297 + 553 90 20.5 -23.4 NP_049339 5' arm      3' arm
8299 + 2090 89 20.5 -25.1 NP_049338 5' arm      3' arm
8300 + 2417 90 19.5 -20.1 NP_049338 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.