miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20143439 NC_003555.1 Giardia lamblia virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
14792 + 5212 69 20.5 -29.9 NP_620070 5' arm      3' arm
14790 + 4 83 21 -27.81 5' arm      3' arm
14791 + 352 78 20 -23.5 NP_619551 5' arm      3' arm
14794 - 5290 90 19 -20.4 NP_620070 5' arm      3' arm
14793 - 434 89 20 -20.3 NP_620070 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.