miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629930 NC_001873.1 Turnip vein-clearing virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6717 + 5943 88 24 -25.4 NP_046154 5' arm      3' arm
6718 - 168 90 22.5 -26.7 NP_046151 5' arm      3' arm
6716 + 5759 89 21.5 -19.8 NP_046154 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.