miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9625433 NC_001335.1 Mycobacterium phage L5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
1454 - 10474 90 19 -19.7 NP_039679 5' arm      3' arm
1358 + 17452 88 19 -26 NP_039690 5' arm      3' arm
1367 + 22486 89 19 -23.2 NP_039695 5' arm      3' arm
1525 - 51661 87 19 -29.5 5' arm      3' arm
1493 - 29406 88 19 -21.3 NP_039708 5' arm      3' arm
1492 - 29001 89 19 -20.1 NP_039708 5' arm      3' arm
1377 + 29515 90 19 -20.2 NP_039708 5' arm      3' arm
1479 - 19705 90 19 -21.1 NP_039692 5' arm      3' arm
1467 - 14260 88 19 -25.5 NP_039686 5' arm      3' arm
1341 + 7071 89 19 -21.3 NP_039677 5' arm      3' arm
1340 + 6861 87 19 -23.7 NP_039677 5' arm      3' arm
1338 + 6255 89 19 -22.6 NP_039676 5' arm      3' arm
1387 + 33538 80 19 -21.3 NP_039714 5' arm      3' arm
1513 - 41713 90 19 -20.7 NP_039730 5' arm      3' arm
1352 + 13382 89 19 -26.3 NP_039684 5' arm      3' arm
1495 - 32107 90 19 -22.9 NP_039712 5' arm      3' arm
1376 + 28594 90 19 -23.5 5' arm      3' arm
1502 - 35865 90 19 -30.1 NP_039717 5' arm      3' arm
1364 + 20896 83 19 -23.1 5' arm      3' arm
1344 + 10276 89 19 -30.3 NP_039679 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.