miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9633069 NC_000898.1 Human herpesvirus 6B

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
834 + 1411 90 21 -19.6 NP_050273 5' arm      3' arm
835 + 2031 87 19.5 -35.3 NP_050176 5' arm      3' arm
836 + 2355 89 19 -26 NP_050273 5' arm      3' arm
837 + 5622 90 19.5 -22.6 5' arm      3' arm
838 + 6427 90 21 -24.2 NP_050277 5' arm      3' arm
839 + 6844 85 19.5 -23.2 NP_050180 5' arm      3' arm
840 + 6965 90 25.5 -20.6 NP_050180 5' arm      3' arm
841 + 8820 87 22 -27.8 5' arm      3' arm
842 + 89319 80 20.5 -25.1 NP_050236 5' arm      3' arm
843 + 99137 88 20.5 -23.3 NP_050241 5' arm      3' arm
844 + 115990 90 24 -25.5 NP_050255 5' arm      3' arm
845 + 129579 89 29 -26.8 NP_050265 5' arm      3' arm
846 + 152197 87 23.5 -23.3 NP_050271 5' arm      3' arm
847 + 152649 84 21.5 -20.8 5' arm      3' arm
848 + 154732 90 21 -19.6 NP_050176 5' arm      3' arm
849 + 155352 87 19.5 -35.3 NP_050273 5' arm      3' arm
850 + 155676 89 19 -26 NP_050176 5' arm      3' arm
851 + 158943 90 19.5 -22.6 5' arm      3' arm
852 + 159748 90 21 -24.2 NP_050180 5' arm      3' arm
853 + 160165 85 19.5 -23.2 NP_050180 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.