miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18138397 NC_003345.1 Halovirus HF2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12507 + 790 87 24 -34 5' arm      3' arm
12669 - 65916 90 21 -33 NP_542592 5' arm      3' arm
12508 + 1269 87 19 -32.5 5' arm      3' arm
12577 + 71210 87 22.5 -31.4 NP_542600 5' arm      3' arm
12654 - 59469 90 20.5 -31.3 NP_542585 5' arm      3' arm
12683 - 75456 90 22.5 -31.1 NP_542606 5' arm      3' arm
12582 - 870 89 20 -30.7 5' arm      3' arm
12527 + 18655 88 22 -30.6 NP_542529 5' arm      3' arm
12637 - 50779 89 20.5 -30.6 NP_542575 5' arm      3' arm
12541 + 31140 89 20 -30.6 5' arm      3' arm
12581 - 364 86 19.5 -30.5 5' arm      3' arm
12561 + 46250 88 23 -29.71 NP_542569 5' arm      3' arm
12526 + 16839 90 20.5 -29.7 NP_542527 5' arm      3' arm
12653 - 59161 90 21 -29.5 NP_542584 5' arm      3' arm
12530 + 22189 90 19.5 -29.3 NP_542535 5' arm      3' arm
12665 - 63219 90 25.5 -29.2 NP_542589 5' arm      3' arm
12536 + 28312 90 21 -29.2 NP_542546 5' arm      3' arm
12506 + 568 89 19.5 -29.1 5' arm      3' arm
12545 + 33363 89 22 -29.1 NP_542554 5' arm      3' arm
12603 - 21730 89 20.5 -28.9 NP_542534 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.