miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18138397 NC_003345.1 Halovirus HF2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12580 + 76839 89 20 -24.9 NP_542608 5' arm      3' arm
12560 + 44849 89 20.5 -21.1 NP_542568 5' arm      3' arm
12559 + 42640 90 20.5 -24 NP_542568 5' arm      3' arm
12555 + 38701 85 19.5 -24.4 NP_542563 5' arm      3' arm
12551 + 36639 85 19.5 -19.7 NP_542560 5' arm      3' arm
12550 + 36463 76 19.5 -23 NP_542559 5' arm      3' arm
12558 + 40505 88 21.5 -21.4 NP_542565 5' arm      3' arm
12556 + 39809 82 21.5 -23.3 NP_542565 5' arm      3' arm
12554 + 38038 86 21.5 -25.7 NP_542563 5' arm      3' arm
12557 + 40079 89 23 -20.9 NP_542565 5' arm      3' arm
12552 + 37202 83 23 -21.5 NP_542562 5' arm      3' arm
12553 + 37674 89 23.5 -25.1 NP_542563 5' arm      3' arm
12544 + 33249 90 19.5 -22.8 NP_542554 5' arm      3' arm
12549 + 35286 88 20 -19.7 NP_542556 5' arm      3' arm
12548 + 35106 90 20 -25.7 NP_542556 5' arm      3' arm
12543 + 32264 87 20 -23.2 NP_542554 5' arm      3' arm
12547 + 34949 89 21 -21.7 NP_542556 5' arm      3' arm
12561 + 46250 88 23 -29.71 NP_542569 5' arm      3' arm
12562 + 46547 83 20 -22.1 NP_542569 5' arm      3' arm
12563 + 47340 90 19.5 -26.3 NP_542569 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.