miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
39163630 NC_005286.1 Pelargonium flower break virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24985 + 3668 90 19 -22.3 5' arm      3' arm
24986 - 2846 89 19 -21.4 NP_945127 5' arm      3' arm
24981 + 458 90 20.5 -28.4 NP_945122 5' arm      3' arm
24982 + 764 87 20.5 -30.7 NP_945122 5' arm      3' arm
24983 + 1119 80 21 -19.5 NP_945123 5' arm      3' arm
24984 + 1724 88 21 -19.5 NP_945123 5' arm      3' arm
24980 + 32 89 23 -24.3 NP_945122 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.